Questions for bader calculation on perfect graphene sheet
Posted: Thu Jul 10, 2014 6:32 am
Hello,
I am trying to calculate bader charge for a perfect graphene sheet with lattice parameter a=8.52168, b=9.84000, c=10.0000. The supercell is a cubic one containing 32 carbon atoms.
Since this is a perfect one in which one carbon atom binds with 3 adjacent atoms and one unused delocalized electron, I expect the bader result to be the charge of 4 for one carbon atom.
Based on my little knowledge about this area including NGX,Y,ZF effect on the accuracy (I 'm not pretty sure though) and with the INCAR settings included below, with increasing the value of them(NGX,Y,ZF),
I tried several times for getting the expected results.
For the first time, I used NGXF= 96, NGYF= 108 and NGZF=112, and then *2 for second trial. The first result gave me a periodical values of charge with difference between atoms was from about 0.12 to about 0.3.
Though the second one was much better than the previous one in my opinion, since the periodicity decreased from 8 to 2 with the charge difference was only 0.0154, that of the 'third' trial with the NGX,Y,ZF value of 3 times compared to the first one was not better at all.
The reason why I thought this way was the periodicity increased once again to 8 and the difference was increased though smaller than those of first trial.
Simply, I need to know some about this bader calculation.
1. I want to figure out what are the criteria that determine the accuracy of this calculation (parameter or flag)
2. I want to know how to set the NGX,Y,ZF and/or NGX,Y,Z for my objective.
3. I want to find whether there would be an error or irrelevant flag in my INCAR settings.
Here is my INCAR details.
Startparameter for this Run:
NWRITE = 2; LPETIM=F write-flag & timer
ISTART = 1 job : 0-new 1-cont 2-samecut
ISPIN = 2; NPAR = 2; LAECHG = T; SYMPREC = 1E-8
Electronic Relaxation 1
ENCUT = 400.00 eV; NELM = 90; NELMIN = 4; EDIFFG = -5E-02; EDIFF = 1E-04 stopping-criterion for ELM
prec = high; RWIGS = 0.863
Ionic Relaxation
NSW = 0 number of steps for IOM; IBRION = -1 ionic relax: 0-MD 1-quasi-New 2-CG
DOS related values:
ISMEAR = 1; SIGMA = 0.05
# ISMEAR = -5
Electronic Relaxation 2
IALGO = 48 algorithm
LDIAG = T sub-space diagonalisation
LREAL = A ; LWAVE = T
# LELF = T; # LPARD = T; # IBAND = 97
# NGX = 100; NGY =100; NGZ =100
NGXF = 198; NGYF = 216; NGZF = 224
Any comments on any part of my question will be very grateful for me.
Thank you very much.
Best,
Denny
I am trying to calculate bader charge for a perfect graphene sheet with lattice parameter a=8.52168, b=9.84000, c=10.0000. The supercell is a cubic one containing 32 carbon atoms.
Since this is a perfect one in which one carbon atom binds with 3 adjacent atoms and one unused delocalized electron, I expect the bader result to be the charge of 4 for one carbon atom.
Based on my little knowledge about this area including NGX,Y,ZF effect on the accuracy (I 'm not pretty sure though) and with the INCAR settings included below, with increasing the value of them(NGX,Y,ZF),
I tried several times for getting the expected results.
For the first time, I used NGXF= 96, NGYF= 108 and NGZF=112, and then *2 for second trial. The first result gave me a periodical values of charge with difference between atoms was from about 0.12 to about 0.3.
Though the second one was much better than the previous one in my opinion, since the periodicity decreased from 8 to 2 with the charge difference was only 0.0154, that of the 'third' trial with the NGX,Y,ZF value of 3 times compared to the first one was not better at all.
The reason why I thought this way was the periodicity increased once again to 8 and the difference was increased though smaller than those of first trial.
Simply, I need to know some about this bader calculation.
1. I want to figure out what are the criteria that determine the accuracy of this calculation (parameter or flag)
2. I want to know how to set the NGX,Y,ZF and/or NGX,Y,Z for my objective.
3. I want to find whether there would be an error or irrelevant flag in my INCAR settings.
Here is my INCAR details.
Startparameter for this Run:
NWRITE = 2; LPETIM=F write-flag & timer
ISTART = 1 job : 0-new 1-cont 2-samecut
ISPIN = 2; NPAR = 2; LAECHG = T; SYMPREC = 1E-8
Electronic Relaxation 1
ENCUT = 400.00 eV; NELM = 90; NELMIN = 4; EDIFFG = -5E-02; EDIFF = 1E-04 stopping-criterion for ELM
prec = high; RWIGS = 0.863
Ionic Relaxation
NSW = 0 number of steps for IOM; IBRION = -1 ionic relax: 0-MD 1-quasi-New 2-CG
DOS related values:
ISMEAR = 1; SIGMA = 0.05
# ISMEAR = -5
Electronic Relaxation 2
IALGO = 48 algorithm
LDIAG = T sub-space diagonalisation
LREAL = A ; LWAVE = T
# LELF = T; # LPARD = T; # IBAND = 97
# NGX = 100; NGY =100; NGZ =100
NGXF = 198; NGYF = 216; NGZF = 224
Any comments on any part of my question will be very grateful for me.
Thank you very much.
Best,
Denny