UT theoretical chemistry code forum

I try to run the example of "akmc-cu100mrr-vasp", some error information were reported as this:


Server is locked by pid 135075
Server is locked by pid 135075
Server is locked by pid 135075
Server is locked by pid 135075
Traceback (most recent call last):
File "/public3/home/sc55763/para/eon/bin/eon", line 3, in <module>
main()
File "/public3/home/sc55763/para/eon/eon/main.py", line 24, in main
akmc.main()
File "/public3/home/sc55763/para/eon/eon/akmc.py", line 571, in main
if lock.aquirelock():
File "/public3/home/sc55763/para/eon/eon/locking.py", line 34, in aquirelock
if self.islocked():
File "/public3/home/sc55763/para/eon/eon/locking.py", line 15, in islocked
self.pid = int(f.read().strip())
ValueError: invalid literal for int() with base 10: ''
Traceback (most recent call last):
File "/public3/home/sc55763/para/eon/bin/eon", line 3, in <module>
main()
File "/public3/home/sc55763/para/eon/eon/main.py", line 24, in main
akmc.main()
File "/public3/home/sc55763/para/eon/eon/akmc.py", line 571, in main
if lock.aquirelock():
File "/public3/home/sc55763/para/eon/eon/locking.py", line 34, in aquirelock
if self.islocked():
File "/public3/home/sc55763/para/eon/eon/locking.py", line 15, in islocked
self.pid = int(f.read().strip())
ValueError: invalid literal for int() with base 10: ''
Traceback (most recent call last):
File "/public3/home/sc55763/para/eon/bin/eon", line 3, in <module>
main()
File "/public3/home/sc55763/para/eon/eon/main.py", line 24, in main
akmc.main()
File "/public3/home/sc55763/para/eon/eon/akmc.py", line 571, in main
if lock.aquirelock():
File "/public3/home/sc55763/para/eon/eon/locking.py", line 34, in aquirelock
if self.islocked():
File "/public3/home/sc55763/para/eon/eon/locking.py", line 15, in islocked
self.pid = int(f.read().strip())
ValueError: invalid literal for int() with base 10: ''
Traceback (most recent call last):
File "/public3/home/sc55763/para/eon/bin/eon", line 3, in <module>
main()
File "/public3/home/sc55763/para/eon/eon/main.py", line 24, in main
akmc.main()
File "/public3/home/sc55763/para/eon/eon/akmc.py", line 571, in main
if lock.aquirelock():
File "/public3/home/sc55763/para/eon/eon/locking.py", line 34, in aquirelock
if self.islocked():
File "/public3/home/sc55763/para/eon/eon/locking.py", line 15, in islocked
self.pid = int(f.read().strip())
ValueError: invalid literal for int() with base 10: ''
Traceback (most recent call last):
File "/public3/home/sc55763/para/eon/bin/eon", line 3, in <module>
main()
File "/public3/home/sc55763/para/eon/eon/main.py", line 24, in main
akmc.main()
File "/public3/home/sc55763/para/eon/eon/akmc.py", line 571, in main
if lock.aquirelock():
File "/public3/home/sc55763/para/eon/eon/locking.py", line 34, in aquirelock
if self.islocked():
File "/public3/home/sc55763/para/eon/eon/locking.py", line 15, in islocked
self.pid = int(f.read().strip())
ValueError: invalid literal for int() with base 10: ''
Traceback (most recent call last):
File "/public3/home/sc55763/para/eon/bin/eon", line 3, in <module>
main()
File "/public3/home/sc55763/para/eon/eon/main.py", line 24, in main
akmc.main()
File "/public3/home/sc55763/para/eon/eon/akmc.py", line 571, in main
if lock.aquirelock():
File "/public3/home/sc55763/para/eon/eon/locking.py", line 34, in aquirelock
if self.islocked():
File "/public3/home/sc55763/para/eon/eon/locking.py", line 15, in islocked
self.pid = int(f.read().strip())
ValueError: invalid literal for int() with base 10: ''
Traceback (most recent call last):
File "/public3/home/sc55763/para/eon/bin/eon", line 3, in <module>
main()
File "/public3/home/sc55763/para/eon/eon/main.py", line 24, in main
akmc.main()
File "/public3/home/sc55763/para/eon/eon/akmc.py", line 571, in main
if lock.aquirelock():
File "/public3/home/sc55763/para/eon/eon/locking.py", line 34, in aquirelock
if self.islocked():
File "/public3/home/sc55763/para/eon/eon/locking.py", line 15, in islocked
self.pid = int(f.read().strip())
ValueError: invalid literal for int() with base 10: ''
srun: error: j2407: tasks 0-22,24-63: Exited with exit code 1
Eon version svn revision svnversion: /public3/soft/anaconda/Anaconda3-3.7.3-wjl/
lib/libuuid.so.1: no version information available (required by /lib64/libapr-1.
so.0)
2471

Traceback (most recent call last):
File "/public3/home/sc55763/para/eon/bin/eon", line 3, in <module>
main()
File "/public3/home/sc55763/para/eon/eon/main.py", line 24, in main
akmc.main()
File "/public3/home/sc55763/para/eon/eon/akmc.py", line 600, in main
akmc(config)
File "/public3/home/sc55763/para/eon/eon/akmc.py", line 87, in akmc
current_state = states.get_state(start_state_num)
File "/public3/home/sc55763/para/eon/eon/statelist.py", line 118, in get_state
st = self.StateClass(statepath = os.path.join(self.path, str(state_number)),
File "/public3/home/sc55763/para/eon/eon/akmcstate.py", line 39, in __init__
state.State.__init__(self,statepath, statenumber,statelist, previous_state_n
um,
File "/public3/home/sc55763/para/eon/eon/state.py", line 40, in __init__
raise IOError("State needs a reactant_path when it is being instantiated to
disk")
OSError: State needs a reactant_path when it is being instantiated to disk
srun: error: j2407: task 23: Exited with exit code 1



I don't know how to deal with this problem. could anyone give me some useful information about it?