Empty MODECAR

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sungeng
Posts: 10
Joined: Sat Sep 01, 2012 1:03 am

Empty MODECAR

Post by sungeng »

when I finished a CNEB calculation successfully, then I used the nebresult.pl scripts, there was no problem. But the next step, when I use the neb2dim.pl to generate the files for a new dimer calculation, the MODECAR is empty, why?
lgxyz
Posts: 51
Joined: Tue Sep 07, 2010 1:52 pm

Re: Empty MODECAR

Post by lgxyz »

Maybe the six line of POSCARs should not contain element name.
sungeng
Posts: 10
Joined: Sat Sep 01, 2012 1:03 am

Re: Empty MODECAR

Post by sungeng »

lgxyz wrote:
> Maybe the six line of POSCARs should not contain element name.

I have tried removed the sixth line of element name of POSCARs, but the MODECAR still is empty....
sungeng
Posts: 10
Joined: Sat Sep 01, 2012 1:03 am

Re: Empty MODECAR

Post by sungeng »

some new information, I have tried the modemake.pl script, it can generate the MODECAR right, so it should be the fault of neb2dim.pl scripts, so how could i modify the scripts.
thank you for help in advance
graeme
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Re: Empty MODECAR

Post by graeme »

If you can post a .tar.gz file of the neb run, it will help to debug this and fix the scripts.
sungeng
Posts: 10
Joined: Sat Sep 01, 2012 1:03 am

Re: Empty MODECAR

Post by sungeng »

This is my neb file which is a calculation for CO dissociation on Rh(111) surface.
Thank you
Attachments
co-dis.tar.gz
co_dis neb files
(9.03 MiB) Downloaded 16302 times
graeme
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Re: Empty MODECAR

Post by graeme »

Something strange is going on. When I run neb2dim.pl in your calculation, it is running fine and I get a MODECAR.

Did you download all of the vtstscripts into a directory from which neb2dim.pl is run?

If yes, do you get any error messages when you run the script?
sungeng
Posts: 10
Joined: Sat Sep 01, 2012 1:03 am

Re: Empty MODECAR

Post by sungeng »

[quote="graeme"]Something strange is going on. When I run neb2dim.pl in your calculation, it is running fine and I get a MODECAR.

Did you download all of the vtstscripts into a directory from which neb2dim.pl is run?

If yes, do you get any error messages when you run the script?[/quote]

I just tried to replace my script neb2dim.pl and modemake.pl with the revised ones 835 and 806 by Henkelman group, and now it works well.

And for your questions, when I run the old script, there was no error messages.

thank you for your help
graeme
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Re: Empty MODECAR

Post by graeme »

Ok, good to hear Perhaps we need to update our distribution.
lgxyz
Posts: 51
Joined: Tue Sep 07, 2010 1:52 pm

Re: Empty MODECAR

Post by lgxyz »

hi, sungeng
"I just tried to replace my script neb2dim.pl and modemake.pl with the revised ones 835 and 806 by Henkelman group, and now it works well."

How to get the revised ones 835 and 806? Thanks very much!
graeme
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Re: Empty MODECAR

Post by graeme »

You can always download the latest code using the instructions here:
http://theory.cm.utexas.edu/henkelman/code/
lgxyz
Posts: 51
Joined: Tue Sep 07, 2010 1:52 pm

Re: Empty MODECAR

Post by lgxyz »

I have download the latest version of vtstscript, but the genarated MODECAR is still empty. Pls give suggestions! Thanks!
graeme
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Re: Empty MODECAR

Post by graeme »

I just updated the vtstscripts on our web page. Please check again, and perhaps send me your files if there is still a problem.
lgxyz
Posts: 51
Joined: Tue Sep 07, 2010 1:52 pm

Re: Empty MODECAR

Post by lgxyz »

Yes. I got MODECAR using the latest scripts. Thanks very much!
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