from converged neb to dimer: ts goes away....
Posted: Tue Jan 28, 2020 6:37 am
Hi, all,
I have such a problem to examine the barrier corresponds to the barrier of flipping the Si-dimer on the famous Si(001) surface. I started by climbing neb, using 3 images, gamma point k, and the calculation successfully converged to every image below 0.02 ev/A. TS is image #2
As a next step, i tweaked up k-mesh to 221, and i turned to the dimer method. I started from the structure of previous neb ts structure, generated MODECAR from image #1 and #3. However, the calculation appears to drift away from TS.
DIMCAR:
Step Force Torque Energy Curvature Angle
1 0.79196 2.22529 -689.47803 -0.05269 8.39019
1 0.79196 1.79098 -689.47803 -0.21251 12.66320
1 0.79196 1.93659 -689.47803 -0.34641 11.15903
1 0.79196 1.82265 -689.47803 -0.46111 9.41741
2 0.56822 2.53633 -689.49585 0.50137 6.08050
2 0.56822 2.38090 -689.49585 0.48074 7.26693
2 0.56822 2.37506 -689.49585 0.48513 5.86436
2 0.56822 2.46124 -689.49585 0.52810 7.57540
3 0.70682 3.14154 -689.46733 0.77514 -0.35409
3 0.70682 3.13991 -689.46733 0.76921 4.51139
3 0.70682 3.05952 -689.46733 0.79272 1.42769
3 0.70682 3.02414 -689.46733 0.77780 1.48496
4 0.84691 3.18173 -689.43448 0.99776 -4.59753
4 0.84691 3.08622 -689.43448 1.03419 -0.22461
4 0.84691 3.09120 -689.43448 1.03370 0.38756
4 0.84691 3.08001 -689.43448 1.03427 0.07787
5 1.07428 3.47539 -689.39200 0.71152 -1.29994
5 1.07428 3.51904 -689.39200 0.72328 0.13260
5 1.07428 3.51275 -689.39200 0.72327 -0.02025
5 1.07428 3.51361 -689.39200 0.72330 0.00983
6 1.33913 3.14813 -689.33800 0.97536 0.00712
6 1.33913 3.14720 -689.33800 0.97688 -0.07852
6 1.33913 3.14807 -689.33800 0.97717 0.01788
6 1.33913 3.14787 -689.33800 0.97713 -0.00317
7 1.62116 3.46599 -689.27034 1.35962 4.20846
7 1.62116 3.51514 -689.27034 1.31415 -0.11275
7 1.62116 3.51437 -689.27034 1.31286 0.01526
7 1.62116 3.51444 -689.27034 1.31303 -0.00691
8 1.90995 3.31805 -689.18560 1.68274 2.84761
8 1.90995 3.39782 -689.18560 1.66275 -0.26209
8 1.90995 3.39241 -689.18560 1.66156 0.06151
8 1.90995 3.39363 -689.18560 1.66176 -0.01510
9 2.20850 3.98320 -689.08104 1.82547 -0.35611
9 2.20850 3.97275 -689.08104 1.78972 0.07866
9 2.20850 3.97419 -689.08104 1.78975 -0.03946
9 2.20850 3.97315 -689.08104 1.78980 0.02738
10 2.52954 3.63465 -688.95385 1.89024 0.97218
10 2.52954 3.64857 -688.95385 1.87923 -0.27431
10 2.52954 3.64379 -688.95385 1.87989 0.11248
10 2.52954 3.64567 -688.95385 1.87961 -0.04681
I suspect i did something wrong with the incar setting for the dim run, as below
INCAR_DIM
PREC = Normal
ENCUT = 400.000
IBRION = 3 # NEB/dimer needs 1 or 3, not 2
NSW = 100
ISIF = 2
NELMIN = 6
EDIFF = 1.0e-07
EDIFFG = -0.02
VOSKOWN = 1
NBLOCK = 1
NWRITE = 1
NELM = 60
ALGO = Normal (blocked Davidson)
ISPIN = 1 # no spin polarized calculation
INIWAV = 1
ISTART = 0
ICHARG = 2
LWAVE = .FALSE.
LCHARG = .FALSE.
ADDGRID = .FALSE.
ISMEAR = 0 # recommended for semiconductor
SIGMA = 0.05 # recommended for semiconductor
LREAL = A # Manual recommends A for mixed ions or more than 20 atoms
POTIM = 0
# NEB/dimer
#ICHAIN = 2 # 0 switches on NBE;
#IMAGES = 3 # number of images, exclude is and fs
#SPRING = -5
#LCLIMB = .TRUE.
# DIMER PARAMETERS
ICHAIN=2 # swithes on dimer
DdR=0.005
DRotMax=4
DFNMin=0.01
DFNMax=1.0
# optimizer
IOPT = 2 # cg
MAXMOVE = 0.1
#TIMESTEP = 0.1
Could anyone give some help on what i did wrong?
I attach neb-gama and dim-k221 calculatiions here
I have such a problem to examine the barrier corresponds to the barrier of flipping the Si-dimer on the famous Si(001) surface. I started by climbing neb, using 3 images, gamma point k, and the calculation successfully converged to every image below 0.02 ev/A. TS is image #2
As a next step, i tweaked up k-mesh to 221, and i turned to the dimer method. I started from the structure of previous neb ts structure, generated MODECAR from image #1 and #3. However, the calculation appears to drift away from TS.
DIMCAR:
Step Force Torque Energy Curvature Angle
1 0.79196 2.22529 -689.47803 -0.05269 8.39019
1 0.79196 1.79098 -689.47803 -0.21251 12.66320
1 0.79196 1.93659 -689.47803 -0.34641 11.15903
1 0.79196 1.82265 -689.47803 -0.46111 9.41741
2 0.56822 2.53633 -689.49585 0.50137 6.08050
2 0.56822 2.38090 -689.49585 0.48074 7.26693
2 0.56822 2.37506 -689.49585 0.48513 5.86436
2 0.56822 2.46124 -689.49585 0.52810 7.57540
3 0.70682 3.14154 -689.46733 0.77514 -0.35409
3 0.70682 3.13991 -689.46733 0.76921 4.51139
3 0.70682 3.05952 -689.46733 0.79272 1.42769
3 0.70682 3.02414 -689.46733 0.77780 1.48496
4 0.84691 3.18173 -689.43448 0.99776 -4.59753
4 0.84691 3.08622 -689.43448 1.03419 -0.22461
4 0.84691 3.09120 -689.43448 1.03370 0.38756
4 0.84691 3.08001 -689.43448 1.03427 0.07787
5 1.07428 3.47539 -689.39200 0.71152 -1.29994
5 1.07428 3.51904 -689.39200 0.72328 0.13260
5 1.07428 3.51275 -689.39200 0.72327 -0.02025
5 1.07428 3.51361 -689.39200 0.72330 0.00983
6 1.33913 3.14813 -689.33800 0.97536 0.00712
6 1.33913 3.14720 -689.33800 0.97688 -0.07852
6 1.33913 3.14807 -689.33800 0.97717 0.01788
6 1.33913 3.14787 -689.33800 0.97713 -0.00317
7 1.62116 3.46599 -689.27034 1.35962 4.20846
7 1.62116 3.51514 -689.27034 1.31415 -0.11275
7 1.62116 3.51437 -689.27034 1.31286 0.01526
7 1.62116 3.51444 -689.27034 1.31303 -0.00691
8 1.90995 3.31805 -689.18560 1.68274 2.84761
8 1.90995 3.39782 -689.18560 1.66275 -0.26209
8 1.90995 3.39241 -689.18560 1.66156 0.06151
8 1.90995 3.39363 -689.18560 1.66176 -0.01510
9 2.20850 3.98320 -689.08104 1.82547 -0.35611
9 2.20850 3.97275 -689.08104 1.78972 0.07866
9 2.20850 3.97419 -689.08104 1.78975 -0.03946
9 2.20850 3.97315 -689.08104 1.78980 0.02738
10 2.52954 3.63465 -688.95385 1.89024 0.97218
10 2.52954 3.64857 -688.95385 1.87923 -0.27431
10 2.52954 3.64379 -688.95385 1.87989 0.11248
10 2.52954 3.64567 -688.95385 1.87961 -0.04681
I suspect i did something wrong with the incar setting for the dim run, as below
INCAR_DIM
PREC = Normal
ENCUT = 400.000
IBRION = 3 # NEB/dimer needs 1 or 3, not 2
NSW = 100
ISIF = 2
NELMIN = 6
EDIFF = 1.0e-07
EDIFFG = -0.02
VOSKOWN = 1
NBLOCK = 1
NWRITE = 1
NELM = 60
ALGO = Normal (blocked Davidson)
ISPIN = 1 # no spin polarized calculation
INIWAV = 1
ISTART = 0
ICHARG = 2
LWAVE = .FALSE.
LCHARG = .FALSE.
ADDGRID = .FALSE.
ISMEAR = 0 # recommended for semiconductor
SIGMA = 0.05 # recommended for semiconductor
LREAL = A # Manual recommends A for mixed ions or more than 20 atoms
POTIM = 0
# NEB/dimer
#ICHAIN = 2 # 0 switches on NBE;
#IMAGES = 3 # number of images, exclude is and fs
#SPRING = -5
#LCLIMB = .TRUE.
# DIMER PARAMETERS
ICHAIN=2 # swithes on dimer
DdR=0.005
DRotMax=4
DFNMin=0.01
DFNMax=1.0
# optimizer
IOPT = 2 # cg
MAXMOVE = 0.1
#TIMESTEP = 0.1
Could anyone give some help on what i did wrong?
I attach neb-gama and dim-k221 calculatiions here