Dear Mr/Ms,
I am trying to run Bader using Yu and Trinkle refinment for my structure, the command I am using is
bader -r -3 CHGCAR -ref CHGCAR_sum
It started and then killed giving me
GRID BASED BADER ANALYSIS (Version 0.28a 07/12/12)
OPEN ... CHGCAR
VASP-STYLE INPUT FILE
VASP5 format
Density-grid 108 x 294 x 420
CLOSE ... CHGCAR
RUN TIME: 4.20 SECONDS
OPEN ... CHGCAR_sum
VASP-STYLE INPUT FILE
VASP5 format
Density-grid 108 x 294 x 420
CLOSE ... CHGCAR_sum
RUN TIME: 4.49 SECONDS
CALCULATING BADER CHARGE DISTRIBUTION
0 10 25 50 75 100
PERCENT DONE: **********************
REFINING AUTOMATICALLY
ITERATION: 1
EDGE POINTS: 3951087
REASSIGNED POINTS: 165135
ITERATION: 2
CHECKED POINTS: 2293251
REASSIGNED POINTS: 0
REFINING USING THE WEIGHT METHOD OF YU AND TRINKLE
Killed
So, can you please inform me why it keeps crashing, I was trying to find better refinment is this method would be better than running bader -r -2 option? I tried the same command for unit cell and it run correctly, I don't think it is because my supercell is large but can it be it requires finner grid and that is why it craches?
Thanks for your help.
Yu and Trinkle refinment
Moderator: moderators
Re: Yu and Trinkle refinment
A student is currently implementing this method, but it is not finished yet. Please use the regular method, and I'll post when this is functional.