nebbarrier.pl and dist.pl

Vasp transition state theory tools

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hlzya
Posts: 44
Joined: Wed Mar 01, 2006 7:48 am

nebbarrier.pl and dist.pl

Post by hlzya »

Hi,

When the script nebbarrier.pl is used, the file neb.dat is obtained. In this file, I can get the distance between images along the reaction coordinate. And the script dist.pl can also result in the distance between two configurations. However, I found the resulted distances of these two script were different. Can anybody tell me why?

Thanks a lot.

Yi-An
graeme
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Posts: 2267
Joined: Tue Apr 26, 2005 4:25 am
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Re: nebbarrier.pl and dist.pl

Post by graeme »

That's a bit strange since the nebbarrier.pl uses the dist.pl script to calculate the distances along the band (on line 50).

Check if you are comparing POSCARS and/or CONTCAR files in the same way that the nebbarrier script is. Also, note that the distance between images 1 and 3 is the sum of distances between (1 and 2) and (2 and 3).

One more thing: an older version of the nebbarrier.pl script grepped for the distances between images in the OUTCAR files. There is a commented line 29 that did this. If you have an old version of the script, that might explain small differences in distance.
hlzya
Posts: 44
Joined: Wed Mar 01, 2006 7:48 am

Re: nebbarrier.pl and dist.pl

Post by hlzya »

Thank you. I have made a mistake in the defination of the distance generated by the script nebbarrier.pl.
cenwanglai
Posts: 46
Joined: Sun Jun 13, 2010 5:46 am

Re: nebbarrier.pl and dist.pl

Post by cenwanglai »

In the nebbarrier.pl code $dist_cum+=$dist; dist_cum is used as the distance.
So a curve is longer than between the two endpoints straightforward.
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