please correct me in understanding format of "modes.dat"
is tat a eigen vector matrix ?
x11 y11 z11 x12 y12 z12 ... x1natom y1natom z1natom
x21 y21 z21 x22 y22 z22 ... x2natom y2natom z2natom
. . . . . . . . . . . .
. . . . . . . . . . . .
xndof1 yndof1 zndof1 xndof2 yndof2 zndof2 ... xndofnatom ...
Search found 5 matches
- Fri Dec 21, 2012 11:45 pm
- Forum: VTSTTools
- Topic: error while using dymmatrix.pl
- Replies: 8
- Views: 16743
- Fri Dec 21, 2012 7:50 pm
- Forum: VTSTTools
- Topic: error while using dymmatrix.pl
- Replies: 8
- Views: 16743
Re: error while using dymmatrix.pl
Since I cannot link vtstcode to vasp binay right now,
as I have nice results of IBRION=5 run (DYNMAT file, OUTCAR ..)
can you please suggest if there is any way to generate normal mode movie files (or to create modes.dat) by using vtst scripts?
as I have nice results of IBRION=5 run (DYNMAT file, OUTCAR ..)
can you please suggest if there is any way to generate normal mode movie files (or to create modes.dat) by using vtst scripts?
- Fri Dec 21, 2012 9:39 am
- Forum: VTSTTools
- Topic: error while using dymmatrix.pl
- Replies: 8
- Views: 16743
Re: error while using dymmatrix.pl
Dear Dr.Graeme,
Now, after dynamical matrix calculation by modifying INCAR with
ICHAIN=1(my objective is to generate movies for each normal mode),
NSW=49(16 atoms in unitcell),
POTIM=0.0,
IBRION=3 (keeping remaining tags as it is from relaxation run)
and its a single image calculation,
while I ...
Now, after dynamical matrix calculation by modifying INCAR with
ICHAIN=1(my objective is to generate movies for each normal mode),
NSW=49(16 atoms in unitcell),
POTIM=0.0,
IBRION=3 (keeping remaining tags as it is from relaxation run)
and its a single image calculation,
while I ...
- Wed Dec 12, 2012 3:08 pm
- Forum: VTSTTools
- Topic: error while using dymmatrix.pl
- Replies: 8
- Views: 16743
Re: error while using dymmatrix.pl
for testing here i attached OUTCAR and DISPLACECAR
- Wed Dec 12, 2012 1:18 pm
- Forum: VTSTTools
- Topic: error while using dymmatrix.pl
- Replies: 8
- Views: 16743
error while using dymmatrix.pl
error is:
Illegal division by zero at /../dymmatrix.pl line 166
line 166 is:
$matrix->[$current_displacement][$this_displacement] /= (sqrt($mass[$k]*$mass[$i]));
as I dont know perl scripting, pls anyone comment on why $mass[] is coming as zero.?
Thanks in advance.
prasad
Illegal division by zero at /../dymmatrix.pl line 166
line 166 is:
$matrix->[$current_displacement][$this_displacement] /= (sqrt($mass[$k]*$mass[$i]));
as I dont know perl scripting, pls anyone comment on why $mass[] is coming as zero.?
Thanks in advance.
prasad