Search found 117 matches

by andri
Wed Jun 21, 2006 7:08 pm
Forum: VTSTTools
Topic: how to improve the activation energy with NEB?
Replies: 7
Views: 18448

Well, there are couple of problems that see by quickly scanning over your INCAR file. The dimer uses a finite difference scheme where the local curvature is estimated by the force difference in two points, that very close to each other. It is paramount then to calculate the force as accurately as po...
by andri
Wed Jun 21, 2006 2:45 am
Forum: VTSTTools
Topic: how to improve the activation energy with NEB?
Replies: 7
Views: 18448

Where did you send it to, I never receive it? Plus there isn't much that I can do with the INCAR file alone.
by andri
Wed Jun 21, 2006 2:43 am
Forum: VTSTTools
Topic: writing WVAECAR in NEB calculations?
Replies: 2
Views: 9514

I like the setup we have now for handling WAVECAR files. If people like to use them in a subsequent run then then there is nothing simpler than coping them back from the saved directory and un-zipping them. I prefer the simplicity over adding a tag or something to decide the a copy of the WAVECAR sh...
by andri
Wed Jun 21, 2006 2:39 am
Forum: VTSTTools
Topic: which is the preference for EDIFFG flag ?
Replies: 3
Views: 12366

I usually like to converge the forces to values lower than 0.03 but that's of course just my own preference and not an empirical truth. When I start a new NEB calculation I often start with setting EDDIFG = -0.01. If that converges I decrease it to -0.005 and continue. I then continue in this fashio...
by andri
Thu Jun 15, 2006 10:54 pm
Forum: VTSTTools
Topic: how to improve the activation energy with NEB?
Replies: 7
Views: 18448

It is a bit hard to know why the dimer is converging slowly without all the input parameters. Maybe you could send us your run so we can take a look at it to see if there is something obviously wrong. Also make sure to use exactly the same setup as described for the DACAPO calculations, including us...
by andri
Thu Jun 15, 2006 10:41 pm
Forum: VTSTTools
Topic: Neb calculation fails
Replies: 2
Views: 10817

I don't really see any problem with the POSCAR file but we recommend setting the element symbols in the top line for our scripts to work properly, like: Ru N H 10.7876184200000 1.0000000000000000 0.0000000000000000 0.0000000000000000 0.0000000000000000 0.8660436140083640 0.0000000000000000 0.0000000...
by andri
Wed Jun 14, 2006 9:28 pm
Forum: VTSTTools
Topic: how to improve the activation energy with NEB?
Replies: 7
Views: 18448

First off, are you using our implementation of NEB (available at http://theory.cm.utexas.edu/vtsttools/) and what are the other calculations that you are comparing with? Are your calculations converged w.r.t. number of k-points, system size, spin, etc. What about pseudo-potentials and planewave ener...
by andri
Wed Jun 14, 2006 9:17 pm
Forum: VTSTTools
Topic: NEB pathways across unit cell boundaries
Replies: 5
Views: 14895

Our NEB implementation should be airtight in regards to that aspect. I have never had any problems with it, but I guess anything is possible. But I usually try to set up the calculations in such a way that any boundary crossing is unlikely. So if you witness any funny business with our implementatio...
by andri
Tue Jun 13, 2006 4:38 pm
Forum: VTSTTools
Topic: which is the preference for EDIFFG flag ?
Replies: 3
Views: 12366

Converging the force to zero is more appropriate I think. So I commonly use:

EDDIF = 1.0E-4
EDDIFG = -1.0E-3
by andri
Wed May 31, 2006 7:21 pm
Forum: VTSTTools
Topic: how to use nab method with vasp
Replies: 6
Views: 23644

The vtstscripts packages contains many scripts that rely on output generated by our additions to VASP in vtstcode. But the nebmake.pl should work fine for you (as you have tried) even though you don't have the files in vtstcode compiled with VASP. Most of the scripts though you will have to use at y...
by andri
Tue May 30, 2006 6:57 pm
Forum: VTSTTools
Topic: how to use nab method with vasp
Replies: 6
Views: 23644

To set up a NEB calculation, using our toolbox, you begin with your initial and final images (say POSCAR_1 and POSCAR_2). Then you use the nebmake.pl script available as a part of vtstsscripts (http://theory.cm.utexas.edu/vtsttools/downloads/). See http://theory.cm.utexas.edu/vtsttools/scripts/ for ...
by andri
Wed May 17, 2006 6:41 pm
Forum: VTSTTools
Topic: Several maxima and minima with CI-NEB
Replies: 4
Views: 15532

The CI-NEB will converge one image to the overall maximum of the MEP. If you need to isolate the other maxima better then you can either run a separate CI-NEB around a given maximum or launch a min-mode (dimer or lanczos) search from one of the images in the original CI-NEB.
by andri
Fri May 05, 2006 6:10 pm
Forum: VTSTTools
Topic: why does it always let me LOG IN when submitting?
Replies: 3
Views: 11348

I'm not sure what you mean.
by andri
Fri May 05, 2006 2:23 am
Forum: VTSTTools
Topic: How to prepare input files for LANCZOS?
Replies: 3
Views: 14544

The configuration is always in the POSCAR. The MODECAR contains the unstable mode, or the current guess for it. It will be generated at the end of each Lanczos step and if one is in place when a run is initiated then it will be read and the mode used as an initial guess for the Lanczos procedure ins...
by andri
Thu May 04, 2006 4:41 am
Forum: VTSTTools
Topic: How to prepare input files for LANCZOS?
Replies: 3
Views: 14544

Yes, a saddle point run using the Lanczos method uses the same input file as usual, i.e. POTCAR, KPOINTS, POSCAR and INCAR. A MODECAR is not strictly necessary for it to work. Note that there are no 01, 02 etc. subdirectories as for NEB or dimer runs. This is more like a regular structural minimizat...