Search found 16 matches

by jzhao
Fri Mar 09, 2007 9:10 am
Forum: VTSTTools
Topic: first set spring=0, then set spring=-5.0
Replies: 1
Views: 50774

first set spring=0, then set spring=-5.0

Dear all,
I want to perform a neb calculation,and firstly I set the spring constant=0, after calculation I think all the images locate the MEP, then
I use these images as the initial images to set the spring constant=-5.0 to search the saddle point.
Because my calculation is so slow, I think this ...
by jzhao
Fri Mar 02, 2007 12:19 pm
Forum: VTSTTools
Topic: How to run the VASP calculation with Dimer method
Replies: 3
Views: 78158

You could put the initial POSCAR in the directory of 01, then the use the script of diminit.pl (you could find it in the website of http://theory.cm.utexas.edu/vtsttools/scripts/)
to generate the second POSCAR with the first POSCAR, and put it in the directory of 02.
You also can refer some ...
by jzhao
Fri Mar 02, 2007 12:11 pm
Forum: VTSTTools
Topic: how to deal with that NEB running is not convergent ?
Replies: 11
Views: 220178

how to deal with that NEB running is not convergent ?

Dear all, I use 14 image to perform a neb running. After some inoic steps, the neb running is still not convergent. The following are the maximum forces on the 11th image:

NEB: Forces: max atom, RMS 0.631483 0.179357
NEB: Forces: max atom, RMS 0.440029 0.109492
NEB: Forces: max atom, RMS 0 ...
by jzhao
Sun Feb 04, 2007 10:08 am
Forum: VTSTTools
Topic: Why DIMER method switches off the symmetrisations of system?
Replies: 5
Views: 104753

Thanks a lot, Graeme!
But I mean that I want to study an adsorption system, and I use slab model to construct its configuration, and the adsorbed atoms are adsorbed on each side(surface) of the slab, so the system symmetry is S_2 to ensure the two sides have the same structures. But DIMER method ...
by jzhao
Fri Feb 02, 2007 7:02 am
Forum: VTSTTools
Topic: some error information given by NEB running
Replies: 4
Views: 90258

Sorry, I dno't understand your means surely.

Do you mean the problem is related to the energy of the endpoint, or the energy of the endpoint should be provied in these information?
by jzhao
Thu Feb 01, 2007 9:19 am
Forum: VTSTTools
Topic: some error information given by NEB running
Replies: 4
Views: 90258

I use the parameters in INCAR
GGA=91
IBRION=3
POTIM=0.0
ISYM=0
ISMEAR=0;SIGMA=.1
NSW=200
NPAR=16
EDIFF = 0.1E-03
EDIFFG = -0.1E-01
PREC=med
LREAL=FALSE
LWAVE=.FALSE.


#neb parameters
ICHAIN = 0
IMAGES = 3
SPRING = -5.0
LCLIMB = .F.
LTANGENTOLD = .F.
LDNEB = .F.

Whether the reason is that the ...
by jzhao
Thu Feb 01, 2007 8:36 am
Forum: VTSTTools
Topic: some error information given by NEB running
Replies: 4
Views: 90258

some error information given by NEB running

I perform a NEB calculation, but after only one ionic step the calculation is finishced, and it gives the following error information:

NEBV Params: ispring,spring,spring2,spower,efirst,elast
NEBV Params: 3 5.00000000000000 5.00000000000000
1.00000000000000 0.00000000000000D+000 0.00000000000000D ...
by jzhao
Thu Feb 01, 2007 8:00 am
Forum: VTSTTools
Topic: Why DIMER method switches off the symmetrisations of system?
Replies: 5
Views: 104753

Thanks for your reply.
But I want to know which surface structure of the system I should select when the DIMER running ends? That means the structures of the two surface are different, which one is more reasonable?
In my work, I use each surface to construct a system with S_2 symmetrisation to ...
by jzhao
Fri Jan 26, 2007 8:44 am
Forum: VTSTTools
Topic: Why DIMER method switches off the symmetrisations of system?
Replies: 5
Views: 104753

Why DIMER method switches off the symmetrisations of system?

I have a system with S_2 symmetrisation. When I perform a dimer

calculation, I found the sentence in OUTCAR:

[i]IMPORTANT INFORMATION: All symmetrisations will be switched off!
NOSYMM: (Re-)initialisation of all symmetry stuff for point group C_1.[/i]

After the dimer calculation, the structures ...
by jzhao
Fri Jan 26, 2007 7:39 am
Forum: VTSTTools
Topic: how to get the intermediate states with DIMER method?
Replies: 4
Views: 91142

Thanks a lot for your reply so soon!

Now I know how to do it!

Thank you very much again!
by jzhao
Fri Jan 26, 2007 6:21 am
Forum: VTSTTools
Topic: how to get the intermediate states with DIMER method?
Replies: 4
Views: 91142

that is great!

If I want to know the energy of intermediate state, I only need to perform

a common VASP static calculations, right?
by jzhao
Thu Jan 25, 2007 7:53 am
Forum: VTSTTools
Topic: how to get the intermediate states with DIMER method?
Replies: 4
Views: 91142

how to get the intermediate states with DIMER method?

Dear all, I have a question about how to obtain the intermediate states

after finding the saddle point with DIMER method. If the NEB method is

used, it is easy to get the intermediate states, because before starting a

neb calculation a chain of states linking the initial and finals states ...
by jzhao
Mon Sep 19, 2005 5:05 pm
Forum: VTSTTools
Topic: how to plot minimum energy path, after getting saddle point
Replies: 10
Views: 177502

Thanks your replies! I am clear about the choice of fraction.
In fact, I use the DIMER method in my work to explore the diffusion path for a rotation between the metastable state A and the final state B. After finding the saddle point for a relatively lowest-energy diffusion path, I want to plot the ...
by jzhao
Mon Sep 19, 2005 3:28 pm
Forum: VTSTTools
Topic: how to plot minimum energy path, after getting saddle point
Replies: 10
Views: 177502

hi, all. I do some tests but still have something unclear.
1) in my optinion, the distance between the two images in 01 and 02, after finding the saddle point, is very short, so if fraction=1.1, the command :
interpolate.pl 01/CONTCAR 02/CONTCAR 1.1
will make a image quite near the CONTCAR-02.
For ...
by jzhao
Fri Sep 16, 2005 6:47 pm
Forum: VTSTTools
Topic: how to plot minimum energy path, after getting saddle point
Replies: 10
Views: 177502

Thanks your replies!
I browse the page of http://theory.cm.utexas.edu/vtsttools/scripts/, and find the usage of interpolate
interpolate.pl (POSCAR 1) (POSCAR 2) (fraction)
output: POSCAR.out file, to STDOUT

here, "fraction" is just the distance between the image and the saddle point ?