Search found 12 matches

by zhangj
Tue Sep 14, 2010 3:30 am
Forum: VTSTTools
Topic: NEB calculation for molecular rotation
Replies: 0
Views: 12647

NEB calculation for molecular rotation

Dear Graeme,

Does NEB method work for the TS searching in bond rotation? For example, I want to calcuculate the energy barrier of C-C bond rotation in ethonal, however, the results of neb calculation is quite strange. After several hundreds steps, I cannot find obvious high energy point, the energy ...
by zhangj
Thu Aug 19, 2010 8:51 am
Forum: VTSTTools
Topic: Problems in Dimer calculations
Replies: 3
Views: 11484

Re: Problems in Dimer calculations

Dear Graeme,

Thank you for your prompt reply.
I still have queries for Q3:
I'm searching TS with initial guess from NEB calculation. When the forces in the neb caluculation are low enough (as below), I use the image 5 as intial guess and carried out dimer calculation.
0 0.04431500 1398.46409800 0 ...
by zhangj
Tue Aug 17, 2010 8:03 am
Forum: VTSTTools
Topic: Problems in Dimer calculations
Replies: 3
Views: 11484

Problems in Dimer calculations

Dear Graeme,

I'm using Dimer method to search TS, starting from an NEB calculation.
1. Although the force is converged and the curvature is negative, the angle remains high. I'm not sure what the problem is. Here is the DIMCAR file:
Step Force Torque Energy Curvature Angle
1 0.45114 11.19323 ...
by zhangj
Fri Jun 01, 2007 7:48 am
Forum: VTSTTools
Topic: Problem in convergence
Replies: 4
Views: 13009

Thank you very much !
I'm using CI-NEB method, so I don't need run a dimmer calculation to confirm saddle point, right? I read your previous post, you mentioned " The climbing image takes away the need to increase the density of images near the saddle -- there only needs to be enough points in the ...
by zhangj
Wed May 30, 2007 8:07 am
Forum: VTSTTools
Topic: Start state and end state
Replies: 3
Views: 10672

Dear Sir,

Thank you for your reply.
Another question, can I calculate the two pathways ( 1. from start state to intermediate structure, 2. from intermediate structure to final state) respectively, then combine the two pathway together to get MEP?

Thanks again

Zhang Jia
by zhangj
Wed May 30, 2007 2:19 am
Forum: VTSTTools
Topic: Problem in convergence
Replies: 4
Views: 13009

Dear Sir,

Thank you for your reply.

I tried to interpolate three images between start and final state. It seems that the energy and force are reasonable.
First, I run the job with POTIM = 0.01 for 300 ionic iterations
The "nebef.pl" script give
0 0.03601800 -121.36430300 0.00000000
1 0.04227000 ...
by zhangj
Mon May 28, 2007 2:26 am
Forum: VTSTTools
Topic: Problem in convergence
Replies: 4
Views: 13009

Problem in convergence

Dear Sir,

I run my job with POTIM=0.01 unitil the forces drop to about 0.5eV/Ang, then increase POTIM =0.1; also I run the job with POTIM= 0.01 all the time. However, after 5000 steps both jobs have not converge yet. I find it is awkward to visualize the OUTCAR and the structure goes crazy. The ...
by zhangj
Fri May 25, 2007 6:10 am
Forum: VTSTTools
Topic: Start state and end state
Replies: 3
Views: 10672

Start state and end state

Dear Sir,

In NEB method, if I get one image between initial state and end state, can I devide the MEP into two sections? I mean the first section is from initial state to image 1 (which is the new final state); and the second section is from image 1 (which is the new inital state) to final state ...
by zhangj
Mon May 21, 2007 7:31 am
Forum: VTSTTools
Topic: Problem in claculating MEP
Replies: 7
Views: 25999

Sorry to bother you again.

Here is the new force information at 25th iteration when POTIM = 0.01 is performed. You mentioned the forces drop below 1eV/A. Does it point to "Force total" or "Forces: max atom, RMS"? There are several force values, I 'm not sure which one is the benchmark.

Many Thanks ...
by zhangj
Mon May 21, 2007 6:56 am
Forum: VTSTTools
Topic: Problem in claculating MEP
Replies: 7
Views: 25999

Thanks, Graeme. I'll try.
by zhangj
Mon May 21, 2007 5:13 am
Forum: VTSTTools
Topic: Problem in claculating MEP
Replies: 7
Views: 25999

Thank you for your prompt reply.

Here is the force information after the 1st iteration. It seems that the forces are quite big. I wonder which force I should check, is it "Forces:max atom, RMS ...."?

In addition, the current image is generated by nebmake.pl script.
I should use neb_pushapart.pl ...
by zhangj
Mon May 21, 2007 2:33 am
Forum: VTSTTools
Topic: Problem in claculating MEP
Replies: 7
Views: 25999

Problem in claculating MEP

Dear Sir,

I'm trying to calculate MEP using Climbing NEB ( 1 or 3 images are interpolated), however, it is not convergent. The energy is very strange, goes to a possitive value.
I find there's the warning information in the output file "WARNING in EDDRMM: call to ZHEGV failed, returncode = 6 3 3 ...