code: vasp5.2, PBE+D2 calculation, CNEB
>nebef.pl
0 0.00000000 -670.54295300 0.00000000
1 0.03416700 -670.54117300 0.00178000 ! It shows the image 1 is at an extrema.
2 0.03161900 -670.54493200 -0.00197900
3 0.04730700 -670.56123200 -0.01827900
4 0.02543000 -670.58572300 -0.04277000
But ...
Search found 46 matches
- Sun Dec 14, 2014 6:34 am
- Forum: VTSTTools
- Topic: CNEB with vdW corrections
- Replies: 0
- Views: 56154
- Sat Nov 12, 2011 1:51 am
- Forum: VTSTTools
- Topic: optimizer, EDIFF, and DdR in dimer
- Replies: 0
- Views: 50657
optimizer, EDIFF, and DdR in dimer
(1) In the dimer example provided in the website, CG (OPTIM = 2) was used.
Could I change to LBFGS or other NEB optimizer?
In my dimer run when CG optimizer employed, it did not seem to be aggressive because only 0.001 ev or even lower energy decreases for steps.
(2) It seems that the EDIFF ...
Could I change to LBFGS or other NEB optimizer?
In my dimer run when CG optimizer employed, it did not seem to be aggressive because only 0.001 ev or even lower energy decreases for steps.
(2) It seems that the EDIFF ...
- Thu Oct 13, 2011 3:03 am
- Forum: VTSTTools
- Topic: What is the tage DNdR for? It is DdR instead?
- Replies: 2
- Views: 68347
Re: What is the tage DNdR for? It is DdR instead?
When I set the DdR to 0.01, the Torque decreases to a much small value around 1 drastically, with a minus curvature.
Everything seems to be going well.
Everything seems to be going well.
- Wed Oct 12, 2011 11:55 pm
- Forum: VTSTTools
- Topic: What is the tage DNdR for? It is DdR instead?
- Replies: 2
- Views: 68347
What is the tage DNdR for? It is DdR instead?
In the page http://theory.cm.utexas.edu/vtsttools/dimer/
It suggests to incease the finite difference distance DNdR to 0.01 to make the Torque drop systematically as the dimer rotates.
I can not find any DNdR in the OUTCAR file. Does it mean DdR (the dimer separation)?
In my dimer run, the Angle ...
It suggests to incease the finite difference distance DNdR to 0.01 to make the Torque drop systematically as the dimer rotates.
I can not find any DNdR in the OUTCAR file. Does it mean DdR (the dimer separation)?
In my dimer run, the Angle ...
- Wed Oct 12, 2011 1:42 pm
- Forum: VTSTTools
- Topic: How can I restart a dimer rum?
- Replies: 0
- Views: 50555
How can I restart a dimer rum?
>cp CONTCAR POSCAR
>cp NEWMODECAR MODECAR ?
My dimer run had been converged to 0.03 eV/Angstrom and there were three imaginary frequencyies f/i: 80 cm-1, 118 cm-1 and 256 cm-1. The displacements for 256 cm-1 is in the direction of NEB reaction chain to form product configuration.
Main tags for ...
>cp NEWMODECAR MODECAR ?
My dimer run had been converged to 0.03 eV/Angstrom and there were three imaginary frequencyies f/i: 80 cm-1, 118 cm-1 and 256 cm-1. The displacements for 256 cm-1 is in the direction of NEB reaction chain to form product configuration.
Main tags for ...
- Tue Oct 11, 2011 1:36 am
- Forum: VTSTTools
- Topic: Is my dimer run reasonable?
- Replies: 2
- Views: 72793
Re: Is my dimer run reasonable?
Thanks. This is my first dimer run.
- Sun Oct 09, 2011 5:18 pm
- Forum: VTSTTools
- Topic: Is my dimer run reasonable?
- Replies: 2
- Views: 72793
Is my dimer run reasonable?
This is my dimer calucaltion after having been converged to 0.02.
Does it seem to be converging?
Some tags of My INCAR:
EDIFF = 1E-7
EDIFFG = -0.001
IBRION = 3
POTIM = 0
NSW = 300
IOPT = 2
DRotMax = 5
DdR = 1E-2
PW91 + U is considered with a single Gamma point for my 83 atoms supercell.
Does it seem to be converging?
Some tags of My INCAR:
EDIFF = 1E-7
EDIFFG = -0.001
IBRION = 3
POTIM = 0
NSW = 300
IOPT = 2
DRotMax = 5
DdR = 1E-2
PW91 + U is considered with a single Gamma point for my 83 atoms supercell.
- Fri Oct 07, 2011 11:11 pm
- Forum: VTSTTools
- Topic: Total energy of the saddle image sensitive to K sampling
- Replies: 1
- Views: 60551
Total energy of the saddle image sensitive to K sampling
I have converge my CNEB to 0.05 with a single Gamma K-point.
When I switched the saddle image to SCF total energy calculation with more K points (3 * 3 * 1), the latter is higher at ~ 0.1 eV in energy.
And, the total force of scf calulation is seem to be unconverged (for some free atom, the force ...
When I switched the saddle image to SCF total energy calculation with more K points (3 * 3 * 1), the latter is higher at ~ 0.1 eV in energy.
And, the total force of scf calulation is seem to be unconverged (for some free atom, the force ...
- Fri Oct 07, 2011 9:13 am
- Forum: VTSTTools
- Topic: Dimer from NEB...moving away from saddle point?
- Replies: 5
- Views: 120703
Re: Dimer from NEB...moving away from saddle point?
What does the DFT + U matter to the dimer calculation?
Is there any problem comparing to DFT without U correction?
Is there any problem comparing to DFT without U correction?
- Fri Sep 23, 2011 11:50 am
- Forum: VTSTTools
- Topic: a continuum solvation model in vasp?
- Replies: 4
- Views: 120462
Re: a continuum solvation model in vasp?
Prof. Liu = Liu Zhipan?
- Wed Sep 21, 2011 2:56 pm
- Forum: VTSTTools
- Topic: Extrema images in CL-NEB and distances between images
- Replies: 3
- Views: 100241
Re: Extrema images in CL-NEB and distances between images
Graeme, the line (NEB: no climbing image found) disappeared when I set the EFIRST to a value between the energy 01 image and 04.
I think I have got your points in EFIRST and ELAST in INCAR.
Cheers ~
I think I have got your points in EFIRST and ELAST in INCAR.
Cheers ~
- Tue Sep 20, 2011 1:32 pm
- Forum: VTSTTools
- Topic: Extrema images in CL-NEB and distances between images
- Replies: 3
- Views: 100241
Re: Extrema images in CL-NEB and distances between images
Dear Graeme, you are so helpful! I love you! ~
I put a small molecule in the slab vacuum 4 Angstrom from the surface. The molecule will be adsorbed to the surface and react with pre-adsorbed surface species. In this process, there is a energy barrier.
So the initial geometry is true acting as a ...
I put a small molecule in the slab vacuum 4 Angstrom from the surface. The molecule will be adsorbed to the surface and react with pre-adsorbed surface species. In this process, there is a energy barrier.
So the initial geometry is true acting as a ...
- Mon Sep 19, 2011 11:47 pm
- Forum: VTSTTools
- Topic: Extrema images in CL-NEB and distances between images
- Replies: 3
- Views: 100241
Extrema images in CL-NEB and distances between images
[attachment=0]CNEB.png[/attachment]
I am running a Cl-NEB run and now the nebef.pl results read like above. We can find two extrema in energy: the local minimum of image 2 at -0.0675 and the maximum of image 4 at -0.0299 ref to initial image 00.
When I check the OUTCAR of all the images, I am ...
I am running a Cl-NEB run and now the nebef.pl results read like above. We can find two extrema in energy: the local minimum of image 2 at -0.0675 and the maximum of image 4 at -0.0299 ref to initial image 00.
When I check the OUTCAR of all the images, I am ...
- Tue Aug 23, 2011 3:32 am
- Forum: VTSTTools
- Topic: optimizer for CNEB
- Replies: 1
- Views: 67000
optimizer for CNEB
“We recommend using CG or LBFGS when accurate forces are available. This is essential for evaluating curvatures. For high forces (far from the minimum) or inaccurate forces (close to the minimum) the quick-min or FIRE methods are recommended. These two methods do not rely on curvatures, and tend to ...
- Mon Aug 22, 2011 8:42 am
- Forum: VTSTTools
- Topic: How to make a ZPE correction for saddle point?
- Replies: 1
- Views: 68091
How to make a ZPE correction for saddle point?
For a freqence-aimed run by IBRION = 5 with several involved atoms movable, we can get real several frequences and an intensive imaginary freqence.
Each of the frequences (fi):
ZPEi=0.5hfi
ZPE(total)=sum of all the ZPEi
E(corrected)= E+ZPE(total)
Is it right? And how to treat about the ...
Each of the frequences (fi):
ZPEi=0.5hfi
ZPE(total)=sum of all the ZPEi
E(corrected)= E+ZPE(total)
Is it right? And how to treat about the ...