Search found 27 matches

by arosen
Sun Jan 21, 2018 4:33 pm
Forum: VTSTTools
Topic: EDWAV error only when using VTST (VASP 5.4.1)
Replies: 4
Views: 24063

EDWAV error only when using VTST (VASP 5.4.1)

If I try to optimize a structure using a VASP 5.4.1 build without VTST, my job runs fine. However, if I instead try to run the optimization using a VTST-enabled VASP 5.4.1 build, I get "EDWAV: internal error, the gradient is not orthogonal" within the first few electronic steps (generally ...
by arosen
Wed Jan 10, 2018 5:34 pm
Forum: VTSTTools
Topic: Optimizers for volume relaxations
Replies: 2
Views: 12240

Re: Optimizers for volume relaxations

Thanks for the info. That's good to know!
by arosen
Wed Jan 10, 2018 2:57 am
Forum: VTSTTools
Topic: Optimizers for volume relaxations
Replies: 2
Views: 12240

Optimizers for volume relaxations

Is it possible to use the optimizers built into VTSTTools (i.e. with the IOPT keyword argument) while doing a volume relaxation in VASP? I tried to do so but the volume remains the same despite setting ISIF = 3.
by arosen
Mon Dec 18, 2017 7:35 am
Forum: VTSTTools
Topic: NEB -> CI-NEB -> Dimer (forces continually increasing)
Replies: 3
Views: 15977

Re: NEB -> CI-NEB -> Dimer (forces continually increasing)

I should add that I think the CI-NEB run ended up capturing some sort of hopping mode of the radical instead of the H-abstraction barrier, unfortunately. That being said, the general idea of using a greater number of images (and a robust optimizer) will go a long way.
by arosen
Sun Dec 17, 2017 6:16 pm
Forum: VTSTTools
Topic: NEB -> CI-NEB -> Dimer (forces continually increasing)
Replies: 3
Views: 15977

Re: NEB -> CI-NEB -> Dimer (forces continually increasing)

Thank you very much for the helpful reply. I really appreciate it, as I've run into very similar issues with other TS I've searched for with this system. I ended up very recently coming to the same conclusion you did - that the number of atoms that move between the initial and final state makes it d...
by arosen
Wed Dec 13, 2017 10:51 pm
Forum: VTSTTools
Topic: NEB -> CI-NEB -> Dimer (forces continually increasing)
Replies: 3
Views: 15977

NEB -> CI-NEB -> Dimer (forces continually increasing)

I am trying to find a TS involving H-abstraction. I optimized the proposed initial and final state. I then did an NEB calculation. The MEP looked appropriate -- the endpoints are the local minima and there is a single local maximum between them. I tried to use the dimer method from the interpolated ...
by arosen
Mon Dec 11, 2017 8:53 pm
Forum: VTSTTools
Topic: Using NEB method with gas-phase species
Replies: 1
Views: 9208

Using NEB method with gas-phase species

How does one use the NEB method to find a transition state where the reactants or products consist of an isolated gas-phase species? For instance, I'm looking at a paper where isobutane reacts with a surface H on HZSM-5, resulting in gas-phase H2 and a surface-bound isobutyl radical. It's unclear to...
by arosen
Tue Dec 05, 2017 7:54 pm
Forum: VTSTTools
Topic: TS from dimer method - making sure it connects reactant/product
Replies: 2
Views: 9904

Re: TS from dimer method - making sure it connects reactant/product

Fantastic, thank you! That will work perfectly.
by arosen
Tue Dec 05, 2017 4:48 pm
Forum: VTSTTools
Topic: TS from dimer method - making sure it connects reactant/product
Replies: 2
Views: 9904

TS from dimer method - making sure it connects reactant/product

Is there any way to confirm that a TS found via the dimer method (e.g. after a rough NEB run) does indeed connect the proposed reactant and product?
by arosen
Fri Dec 01, 2017 5:20 pm
Forum: VTSTTools
Topic: Handling early vs. late TS with NEB methods
Replies: 2
Views: 10079

Re: Handling early vs. late TS with NEB methods

I see. Thanks for the reply!
by arosen
Thu Nov 30, 2017 8:40 pm
Forum: VTSTTools
Topic: Handling early vs. late TS with NEB methods
Replies: 2
Views: 10079

Handling early vs. late TS with NEB methods

I will preface this by saying that I still need to do a bit of reading about the NEB method, so I apologize in advance if this is incompatible with the underlying methodology of the technique. Is it possible to use the NEB method as implemented in VTSTTools to weight one side of the MEP more than th...
by arosen
Sat Oct 14, 2017 4:32 am
Forum: Bader
Topic: Bader v. 1.02
Replies: 2
Views: 18088

Bader v. 1.02

I downloaded the most recent Linux binary on the website, but upon running ./bader -h, it says that it is a 1.0 version from January of this year. Is it just that the version numbering hasn't been updated, or is the binary not up-to-date on the website?