Search found 2255 matches

by graeme
Thu Feb 19, 2009 11:11 pm
Forum: Bader
Topic: Bader charges of two Zr atoms
Replies: 2
Views: 8949

Re: Bader charges of two Zr atoms

Yves, thanks for the post. This is very good to know. It seems to us that the cube file format is not entirely well-defined. They are written by several codes, and the precise formatting is not the same. We have seen this issue of periodic vs non-periodic file types (with or without the repeated edg...
by graeme
Thu Feb 19, 2009 3:30 am
Forum: VTSTTools
Topic: VTST 2.x code updates
Replies: 30
Views: 363350

Re: VTST 2.0 code update

V2.03d (02/18/09) - module for calculating instantons included (note that the extra object instanton.o is needed in the vasp Makefile) - fixed in a vector projection in the doubly nudged elastic band (thanks to Craig Plaisance) - allow lbfgs for regular (non NEB) optimizations Changes to the followi...
by graeme
Thu Feb 19, 2009 3:17 am
Forum: VTSTTools
Topic: major bug found in DNEB method
Replies: 2
Views: 6954

Re: major bug found in DNEB method

I just want to reiterate our thanks for fixing this bug. This was in a standard function, which could have propagated to other parts of our code.
by graeme
Tue Feb 17, 2009 5:48 am
Forum: VTSTTools
Topic: Fermi energy
Replies: 1
Views: 10641

Re: Fermi energy

This doesn't relate to finding transition states; try the general vasp forum for help.
by graeme
Thu Feb 12, 2009 4:39 pm
Forum: VTSTTools
Topic: Regarding nebbarrier and about initial and final strcutures
Replies: 1
Views: 5906

Re: Regarding nebbarrier and about initial and final strcutures

The nebbarrier script needs to get the energies of the initial and final states. It does so from an OUTCAR file in the first (00) and last directories. Our intention is that you copy them from the calculations that were used to make those configurations. But you do not have to use the neb in this wa...
by graeme
Sat Jan 24, 2009 3:37 am
Forum: VTSTTools
Topic: rdf.pl
Replies: 1
Views: 5474

Re: rdf.pl

The bin size should be large enough so that you get a significant number of pairs in each bin, but not so large that you lose resolution in your function. The script we provide is very simple and does not try to predict a suitable bin size. Try a few values to find one that is appropriate. The bin s...
by graeme
Tue Jan 20, 2009 4:13 pm
Forum: VTSTTools
Topic: some quation on CI-NEB usuage with vasp
Replies: 9
Views: 30997

Re: some quation on CI-NEB usuage with vasp

(1) Distances between images approaching 2 Angstroms is quite large. It may converge, but for a long path like this, using 6 images would be safer. (2) A linear initial path can be very poor if you have a rotating molecule. You would probably do better by constructing a path yourself. One way to do ...
by graeme
Tue Jan 20, 2009 7:00 am
Forum: VTSTTools
Topic: DynMat calculations
Replies: 18
Views: 38270

Re: DynMat calculations

Check to make sure that your force criteria (ediffg) is smaller than the force on your initial image. Alternatively, you can also set ediffg very small (1e-5 or so). I don't understand how a different version of vasp would change the behavior of our dynamical matrix calculation. Perhaps check to see...
by graeme
Wed Jan 14, 2009 5:12 am
Forum: VTSTTools
Topic: DIMER question
Replies: 2
Views: 12743

Re: DIMER question

The electronic convergence problem is probably not due to the dimer at all. Try a regular vasp calculation using the same POSCAR file, and you should get the same output for the first electronic steps. There are several reasons that can cause the electronic structure to converge poorly and some solu...
by graeme
Tue Jan 06, 2009 4:57 pm
Forum: Bader
Topic: Core charge
Replies: 31
Views: 176558

Re: Core charge

Are you using the PAW potentials? The AECCAR2 is the not same as the CHGCAR.
by graeme
Sun Jan 04, 2009 4:51 pm
Forum: VTSTTools
Topic: some quation on CI-NEB usuage with vasp
Replies: 9
Views: 30997

Re: some quation on CI-NEB usuage with vasp

For simple elementary processes we generally use 3-5 images. While you might get away with a single image, we don't usually do this because it's too much trouble to redo bands using more images if a single image does not converge. Also, using more images gives information about intermediate minima a...
by graeme
Sun Jan 04, 2009 5:03 am
Forum: VTSTTools
Topic: script chg2cube.pl
Replies: 9
Views: 20557

Re: script chg2cube.pl

I'm pretty sure this is due to a convention that we have in which the first line of your POSCAR or CHGCAR file should be the elements used in the calculation. Try changing your first line from

FeN Oct Bulk Calc

to

Fe N
by graeme
Thu Jan 01, 2009 6:41 am
Forum: Bader
Topic: the total charge
Replies: 2
Views: 8157

Re: the total charge

You will not be able to accurately integrate the total charge density because of the cusps at the atomic centers. Instead, use the total charge to do the partitioning and the integration on the valance charge density. These values will converge with modest grid sizes. To do this, follow the instruct...
by graeme
Sun Dec 28, 2008 1:49 am
Forum: Bader
Topic: bader analysis with USPP
Replies: 3
Views: 9721

Re: bader analysis with USPP

It's very simple: the ACF.dat file has the charge for each atom listed in a table.
by graeme
Wed Dec 24, 2008 3:11 am
Forum: Bader
Topic: Bizarre charges for Ag(111)
Replies: 4
Views: 11689

Re: Bizarre charges for Ag(111)

No, I think that something is very strange. These charges are far too large to make sense.

Are you using vasp5? This new version has a slightly different format and is not read properly by our program yet.

If you can make the file available to use, we'll take a look at it.