Search found 19 matches

by sapper1
Wed Feb 20, 2013 2:41 am
Forum: VTSTTools
Topic: Prefactor calculation setup
Replies: 1
Views: 8591

Prefactor calculation setup

Dear Admin, I have few questions regarding the dynamic calculation setup. (1) Can we use CI-NEB run for dynamical matrix calculation just changing INCAR tags like ICHAIN NSW and POTIM etc as given in the website?. but the 00 folder contains the initial geometry, so how do i set up calculations for t...
by sapper1
Tue Feb 19, 2013 3:24 am
Forum: VTSTTools
Topic: Pre-Exponential factor calculation
Replies: 7
Views: 19710

Pre-Exponential factor calculation

Dear admin, Proff. Graeme,
I was wondering how can we calculate pre-exponential factor after calculating activation barrier using CI-NEB?
thank you for your help in advance.
best
by sapper1
Thu Jan 17, 2013 7:17 pm
Forum: Bader
Topic: Chgdiff.pl script problem
Replies: 3
Views: 16685

Re: Chgdiff.pl script problem

Dear Proff. Graeme, I am still not having success to load the zipped files. could you please check the limit has been updated. I found one thing, if I remove the first line saying "unknown system" from the CHGCAR and CHGCAR_sum then do chgdiff.pl , it works !. I was wondering, if the order...
by sapper1
Thu Jan 17, 2013 7:08 pm
Forum: Bader
Topic: bader analysis for valence and valence+core charge
Replies: 1
Views: 14135

bader analysis for valence and valence+core charge

Dear admin, Proff. Graeme, I used bader script to calculate charge transfer between a molecule and slab. I got different results for charge transfer while doing bader analysis of regular CHGCAR and chgsum of AECCAR0 and AECCAR2. It says sum of those two will give the charge of core and valence. But,...
by sapper1
Thu Jan 17, 2013 2:21 am
Forum: Bader
Topic: Chgdiff.pl script problem
Replies: 3
Views: 16685

Chgdiff.pl script problem

Dear Admin, Proff. Graeme, I was trying to calculate charge difference for a adsorption of a atom on a slab. I generated CHGCAR for slab+atom, slab only, and atom only using same supercell and same grid. after I got the result, I did chgsum.pl CHGCAR(slab)+CHGCAR(atom) to get CHGCAR_sum then chgdiff...
by sapper1
Mon Jan 14, 2013 2:22 am
Forum: VTSTTools
Topic: Vibrational frequency analysis for CI-NEB result
Replies: 5
Views: 14204

Re: Vibrational frequency analysis for CI-NEB result

Dear Proff. Graeme,
thank you for your quick reply.
does that mean we just need to use the POSCAR/CONTCAR of the image at TS and the initial image separately and do vibrational modes calculations using IBRION >5 rather than using all the images.
thank you
best
by sapper1
Mon Jan 14, 2013 12:21 am
Forum: VTSTTools
Topic: Vibrational frequency analysis for CI-NEB result
Replies: 5
Views: 14204

Vibrational frequency analysis for CI-NEB result

Dear Admin, Proff. Graeme,
Since, CI-NEB always puts an image to the transition state,is it necessary to perform vibrational modes analysis for CI-NEB results ? if it is recommended, how can we do such calculations faster for slab+molecule(adsorbed) with many images.
thank you very much
by sapper1
Thu Jan 10, 2013 7:09 pm
Forum: VTSTTools
Topic: CI-NEB shows lower energy for the images than fixed images
Replies: 6
Views: 14911

Re: CI-NEB shows lower energy for the images than fixed imag

Thank you very much Proff. Graeme for the quick reply . here is the OUTCAR-00 and OUTCAR-10
thanks
best
Hom
by sapper1
Thu Jan 10, 2013 6:14 pm
Forum: VTSTTools
Topic: CI-NEB shows lower energy for the images than fixed images
Replies: 6
Views: 14911

Re: CI-NEB shows lower energy for the images than fixed imag

OUTCARS from the last run
thanks
by sapper1
Thu Jan 10, 2013 5:49 pm
Forum: VTSTTools
Topic: CI-NEB shows lower energy for the images than fixed images
Replies: 6
Views: 14911

Re: CI-NEB shows lower energy for the images than fixed imag

Dear Admin, Proff. Graeme,
here are the initial POSCARS and final CONTCARS and OUTCARS
thank you
best
Hom
by sapper1
Thu Jan 10, 2013 5:21 pm
Forum: VTSTTools
Topic: CI-NEB shows lower energy for the images than fixed images
Replies: 6
Views: 14911

CI-NEB shows lower energy for the images than fixed images

Dear Admin, Proff. Graeme, I am having very weird problem. My couple of images close to initial and final images show lower energy than the initial images. I tried minimizing those low energy images (CONTCAR) but they go back (very close) to initial and final energy. so, I don't thing those images a...
by sapper1
Wed Jan 09, 2013 10:35 pm
Forum: VTSTTools
Topic: how to use vtstscripts in RANGER/STAMPEDE
Replies: 1
Views: 7954

how to use vtstscripts in RANGER/STAMPEDE

Dear admin, Proff. Graeme,
I am a new user to the RANGER/STAMPEDE supercomputer. I was able to use vasp in the machine. but, I was wondering how can I use VTSTools already available in the RANGER and STAMPEDE.
thank you
best
Hom
by sapper1
Wed Jan 09, 2013 7:54 pm
Forum: VTSTTools
Topic: Convergence problem with CI-NEB
Replies: 8
Views: 20248

Re: Convergence problem with CI-NEB

Thank you very much Proff. Graeme, I followed your suggestion and did calculations. after turning of the dipole and w/o spin, Now I see that the force decreased and no jump in the energy. After initial run with IBRION 3 and POTIM 0.01, what would be the best optimizer (IOPT) in this case ? or should...
by sapper1
Tue Jan 08, 2013 1:40 am
Forum: VTSTTools
Topic: Convergence problem with CI-NEB
Replies: 8
Views: 20248

Re: Convergence problem with CI-NEB

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